Single-Cell Model Hub

A curated collection of foundation models, virtual cells, and AI systems for single-cell biology — papers, code, and resources.

All Models Foundation Model Geneformer-like Virtual Cell Multi-modal Spatial Perturbation Generative Other
#Cell Atlas #Cross-species #Foundation Model #GPT #Gene Expression #Geneformer #Generative #Masked Modeling #Multi-omics #Perturbation #Spatial #Transformer #Virtual Cell #scBERT #scFoundation #scGPT #scRNA-seq

#Masked Modeling

2
Geneformer-like

Geneformer

Context-aware foundation model for gene network predictions. Transfer learning from 30M single-cell transcriptomes.

2023 · 05 ~100M params Paper → GitHub →
Foundation Model Gene Expression Geneformer Masked Modeling
Foundation Model

scBERT

BERT-based pre-trained model for single-cell transcriptomics with gene-level tokenization.

2022 · 09 ~100M params Paper → GitHub →
Gene Expression Masked Modeling scBERT