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CELLxGENE Census Models

CZI Single-Cell Biology Program · 2023-07-27 · bioRxiv

Foundation models from CZI, trained on CELLxGENE Census data (50M+ cells).

Overview

CZI's CELLxGENE Census project provides pre-trained embedding models and a unified data platform for single-cell transcriptomics. Models include PCA, scVI, and geneformer-style embeddings pre-computed on the full CELLxGENE corpus.

Publication

CELLxGENE Census: a unified platform for single-cell data

Links

📄 Read Paper 💻 GitHub 🌐 Website

Specifications

  • Pretraining DataCELLxGENE (50M+ cells)
  • ModalityscRNA-seq

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